=> Bootstrap dependency digest>=20010302: found digest-20121220 => Checksum SHA1 OK for openmpi-1.6.4.tar.bz2 => Checksum RMD160 OK for openmpi-1.6.4.tar.bz2 ===> Installing dependencies for openmpi-1.6.4 ========================================================================== The supported build options for openmpi are: debug You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.openmpi (not defined) ========================================================================== => Tool dependency libtool-base>=2.2.6bnb3: found libtool-base-2.4.2nb1 => Build dependency libtool-fortran>=2.2.6bnb3: found libtool-fortran-2.4.2 => Full dependency perl>=5.0: found perl-5.16.3 => Full dependency libltdl>=2.4.2: found libltdl-2.4.2 => Full dependency hwloc>=1.4: found hwloc-1.7 ===> Overriding tools for openmpi-1.6.4 ===> Extracting for openmpi-1.6.4 ===> Patching for openmpi-1.6.4 => Applying pkgsrc patches for openmpi-1.6.4 => Fixing libltdl convenience library linkage. ===> Creating toolchain wrappers for openmpi-1.6.4 ===> Configuring for openmpi-1.6.4 => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version hostname: not found ============================================================================ == Configuring Open MPI ============================================================================ *** Startup tests checking build system type... i386-pc-minix checking host system type... i386-pc-minix checking target system type... i386-pc-minix checking for i386-pc-minix-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... yes checking minix/config.h presence... yes checking for minix/config.h... yes checking whether it is safe to define __EXTENSIONS__... yes checking for a BSD-compatible install... /usr/bin/install -c -o root -g operator checking whether build environment is sane... yes checking for a thread-safe mkdir -p... config/install-sh -c -d checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking how to create a ustar tar archive... plaintar checking dependency style of gcc... gcc3 checking whether make supports nested variables... yes *** Checking versions checking Open MPI version... 1.6.4 checking Open MPI release date... Feb 19, 2013 checking Open MPI Subversion repository version... r28081 checking Open MPI Run-Time Environment version... 1.6.4 checking Open MPI Run-Time Environment release date... Feb 19, 2013 checking Open MPI Run-Time Environment Subversion repository version... r28081 checking Open Portable Access Layer version... 1.6.4 checking Open Portable Access Layer release date... Feb 19, 2013 checking Open Portable Access Layer Subversion repository version... r28081 *** Initialization, setup configure: builddir: /usr/pkgsrc/work/parallel/openmpi/work/openmpi-1.6.4 configure: srcdir: /usr/pkgsrc/work/parallel/openmpi/work/openmpi-1.6.4 hostname: not found installing to directory "/usr/pkg" *** OPAL Configuration options checking if want to run code coverage... no checking if want to compile with branch probabilities... no checking if want to debug memory usage... no checking if want to profile memory usage... no checking if want developer-level compiler pickyness... no checking if want developer-level debugging code... no checking if want to install project-internal header files... no checking if want pretty-print stacktrace... yes checking if want pty support... yes checking if want weak symbol support... yes checking if want dlopen support... yes checking if want heterogeneous support... no checking if want trace file debugging... no checking if want fault tolerance... Disabled fault tolerance checking if want IPv6 support... no checking if want package/brand string... Open MPI root@ Distribution checking if want ident string... 1.6.4 checking if want to use an alternative checksum algo for messages... no checking maximum length of processor name... 256 checking maximum length of error string... 256 checking maximum length of object name... 64 checking maximum length of info key... 36 checking maximum length of info val... 256 checking maximum length of port name... 1024 checking maximum length of datarep string... 128 *** ORTE Configuration options checking if want full RTE support... yes checking if want orterun "--prefix" behavior to be enabled by default... no *** OMPI Configuration options checking if want compile-time warnings inside of mpi.h... no checking if want sparse process groups... no checking if want peruse support... no checking if want Fortran 77 bindings... yes checking if want Fortran 90 bindings... no checking Fortran 90 bindings "size"... disabled (Fortran 90 bindings disabled) checking if want PMPI... yes checking if want C++ bindings... yes checking if want MPI::SEEK_SET support... yes checking if want run-time MPI parameter checking... runtime checking max supported array dimension in F90 MPI bindings... 4 ============================================================================ == Compiler and preprocessor tests ============================================================================ *** C compiler and preprocessor checking for i386-pc-minix-gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed expr: syntax error checking whether gcc and cc understand -c and -o together... yes checking for the C compiler vendor... gnu checking for ANSI C header files... (cached) yes checking if gcc supports -finline-functions... yes checking if gcc supports -fno-strict-aliasing... yes expr: syntax error expr: syntax error expr: syntax error expr: syntax error expr: syntax error expr: syntax error expr: syntax error expr: syntax error configure: WARNING: -fno-strict-aliasing has been added to CFLAGS checking if gcc supports __builtin_expect... yes checking if gcc supports __builtin_prefetch... yes checking for C optimization flags... -O3 checking for Interix environment... no checking for C ident string support... #ident checking for int8_t... yes checking for uint8_t... yes checking for int16_t... yes checking for uint16_t... yes checking for int32_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for int128_t... no checking for uint128_t... no checking for long long... yes checking for long double... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for intptr_t... yes checking for uintptr_t... yes checking for mode_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of long... 4 checking size of long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 12 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 24 checking size of void *... 4 checking size of size_t... 4 checking size of ssize_t... 4 checking size of ptrdiff_t... 4 checking size of wchar_t... 4 checking alignment of _Bool... 1 checking alignment of int8_t... 1 checking alignment of int16_t... 2 checking alignment of int32_t... 4 checking alignment of int64_t... 4 checking alignment of char... 1 checking alignment of short... 2 checking alignment of wchar_t... 4 checking alignment of int... 4 checking alignment of long... 4 checking alignment of long long... 4 checking alignment of float... 4 checking alignment of double... 4 checking alignment of long double... 4 checking alignment of float _Complex... 4 checking alignment of double _Complex... 4 checking alignment of long double _Complex... 4 checking alignment of void *... 4 checking for C bool type... no checking size of _Bool... 1 checking for inline... __inline__ checking for C/C++ restrict keyword... __restrict checking for weak symbol support... yes checking for functional offsetof macro... yes expr: syntax error *** C++ compiler and preprocessor checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E expr: syntax error expr: syntax error expr: syntax error checking for the C++ compiler vendor... gnu checking if g++ supports -finline-functions... yes expr: syntax error expr: syntax error expr: syntax error expr: syntax error expr: syntax error expr: syntax error expr: syntax error configure: WARNING: -finline-functions has been added to CXXFLAGS checking if C and C++ are link compatible... yes checking for C++ optimization flags... -O3 checking size of bool... 1 checking alignment of bool... 1 *** C++ compiler and preprocessor checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) gcc3 checking how to run the C++ preprocessor... g++ -E expr: syntax error expr: syntax error checking if C++ compiler works... yes checking if g++ supports -finline-functions... yes expr: syntax error expr: syntax error expr: syntax error configure: WARNING: -finline-functions has been added to CXXFLAGS checking if C and C++ are link compatible... (cached) yes checking for C++ optimization flags... -O3 checking size of bool... (cached) 1 checking alignment of bool... (cached) 1 checking if able to build the MPI C++ bindings... yes checking for the C++ compiler vendor... (cached) gnu expr: syntax error checking if want C++ exception handling... no checking for C++ template_repository_directory... not used checking for C++ compiler template parameters... none needed checking for C++ ident string support... #ident checking if g++ supports __builtin_expect... yes checking if g++ supports __builtin_prefetch... yes expr: syntax error checking if g++ supports const_cast<> properly... yes expr: syntax error *** Compiler characteristics checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(deprecated_argument)... no checking for __attribute__(format)... yes checking for __attribute__(format_funcptr)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(noreturn_funcptr)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(visibility)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking for compiler familyid... 1 checking for compiler familyname... GNU checking for compiler version... 263174 checking for compiler version_str... 4.4.6 *** Assembler checking dependency style of gcc... gcc3 checking for BSD- or MS-compatible name lister (nm)... /usr/pkg.sav/bin/nm -B checking the name lister (/usr/pkg.sav/bin/nm -B) interface... BSD nm checking for fgrep... /usr/bin/grep -F checking if need to remove -g from CCASFLAGS... no expr: syntax error checking whether to enable smp locks... yes checking if .proc/endp is needed... no checking directive for setting text section... .text checking directive for exporting symbols... .globl checking for objdump... objdump checking if .note.GNU-stack is needed... no checking suffix for labels... : checking prefix for global symbol labels... checking prefix for lsym labels... .L checking prefix for function in .type... @ checking if .size is needed... yes checking if .align directive takes logarithmic value... no checking if gcc supports GCC inline assembly... yes checking if gcc supports DEC inline assembly... no checking if gcc supports XLC inline assembly... no checking if g++ supports GCC inline assembly... yes checking if g++ supports DEC inline assembly... no checking if g++ supports XLC inline assembly... no checking for assembly format... default-.text-.globl-:--.L-@-1-0-1-1-0 checking for asssembly architecture... IA32 checking for perl... /usr/pkg/bin/perl checking for pre-built assembly file... yes (atomic-ia32-linux-nongas.s) checking for atomic assembly filename... atomic-ia32-linux-nongas.s *** Fortran 77 compiler checking for i386-pc-minix-gfortran... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes expr: syntax error *** Fortran 90/95 compiler checking for i386-pc-minix-gfortran... f77 checking whether we are using the GNU Fortran compiler... yes checking whether f77 accepts -g... yes expr: syntax error expr: syntax error checking if Fortran 77 compiler works... yes checking f77 external symbol convention... single underscore expr: syntax error checking if C and Fortran 77 are link compatible... yes checking to see if F77 compiler likes the C++ exception flags... skipped (no C++ exceptions flags) checking to see if mpif77/mpif90 compilers need additional linker flags... none checking if Fortran 77 compiler supports CHARACTER... yes checking size of Fortran 77 CHARACTER... 1 checking for C type corresponding to CHARACTER... char checking alignment of Fortran CHARACTER... 1 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports LOGICAL... yes checking size of Fortran 77 LOGICAL... 4 checking for C type corresponding to LOGICAL... int checking alignment of Fortran LOGICAL... 4 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports LOGICAL*1... yes checking size of Fortran 77 LOGICAL*1... 1 checking for C type corresponding to LOGICAL*1... char checking alignment of Fortran LOGICAL*1... 1 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports LOGICAL*2... yes checking size of Fortran 77 LOGICAL*2... 2 checking for C type corresponding to LOGICAL*2... short checking alignment of Fortran LOGICAL*2... 2 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports LOGICAL*4... yes checking size of Fortran 77 LOGICAL*4... 4 checking for C type corresponding to LOGICAL*4... int checking alignment of Fortran LOGICAL*4... 4 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports LOGICAL*8... yes checking size of Fortran 77 LOGICAL*8... 8 checking for C type corresponding to LOGICAL*8... long long checking alignment of Fortran LOGICAL*8... 8 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports INTEGER... yes checking size of Fortran 77 INTEGER... 4 checking for C type corresponding to INTEGER... int checking alignment of Fortran INTEGER... 4 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports INTEGER*1... yes checking size of Fortran 77 INTEGER*1... 1 checking for C type corresponding to INTEGER*1... char checking alignment of Fortran INTEGER*1... 1 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports INTEGER*2... yes checking size of Fortran 77 INTEGER*2... 2 checking for C type corresponding to INTEGER*2... short checking alignment of Fortran INTEGER*2... 2 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports INTEGER*4... yes checking size of Fortran 77 INTEGER*4... 4 checking for C type corresponding to INTEGER*4... int checking alignment of Fortran INTEGER*4... 4 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports INTEGER*8... (cached) no expr: syntax error checking if Fortran 77 compiler supports INTEGER*16... no expr: syntax error checking if Fortran 77 compiler supports REAL... yes checking size of Fortran 77 REAL... 4 checking for C type corresponding to REAL... float checking alignment of Fortran REAL... 4 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports REAL*2... no expr: syntax error checking if Fortran 77 compiler supports REAL*4... yes checking size of Fortran 77 REAL*4... 4 checking for C type corresponding to REAL*4... float checking alignment of Fortran REAL*4... 4 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports REAL*8... yes checking size of Fortran 77 REAL*8... 8 checking for C type corresponding to REAL*8... double checking alignment of Fortran REAL*8... 8 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports REAL*16... no expr: syntax error checking for C type matching bit representation of REAL*16... skipped (no REAL*16) configure: WARNING: MPI_REAL16 and MPI_COMPLEX32 support have been disabled expr: syntax error checking if Fortran 77 compiler supports DOUBLE PRECISION... yes checking size of Fortran 77 DOUBLE PRECISION... 8 checking for C type corresponding to DOUBLE PRECISION... double checking alignment of Fortran DOUBLE PRECISION... 8 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports COMPLEX... yes checking size of Fortran 77 COMPLEX... 8 checking alignment of Fortran COMPLEX... 4 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports DOUBLE COMPLEX... yes checking size of Fortran 77 DOUBLE COMPLEX... 16 checking alignment of Fortran DOUBLE COMPLEX... 8 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports COMPLEX*8... yes checking size of Fortran 77 COMPLEX*8... 8 checking alignment of Fortran COMPLEX*8... 4 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports COMPLEX*16... yes checking size of Fortran 77 COMPLEX*16... 16 checking alignment of Fortran COMPLEX*16... 8 expr: syntax error expr: syntax error checking if Fortran 77 compiler supports COMPLEX*32... no expr: syntax error checking for max Fortran MPI handle index... expr: syntax error test: syntax error expr: syntax error test: syntax error ( 1 < 2147483647 ? 1 : 2147483647 ) checking Fortran value for .TRUE. logical type... 1 checking for correct handling of Fortran logical arrays... yes checking for the value of MPI_STATUS_SIZE... 5 Fortran INTEGERs configure: WARNING: *** Fortran 90/95 bindings disabled by user checking for extra arguments to build a shared library... none needed checking to see if F90 compiler likes the C++ exception flags... skipped (no F90 bindings) checking if Fortran 90 compiler supports CHARACTER... skipped checking if Fortran 90 compiler supports LOGICAL... skipped checking if Fortran 90 compiler supports LOGICAL*1... skipped checking if Fortran 90 compiler supports LOGICAL*2... skipped checking if Fortran 90 compiler supports LOGICAL*4... skipped checking if Fortran 90 compiler supports LOGICAL*8... skipped checking if Fortran 90 compiler supports INTEGER... skipped checking if Fortran 90 compiler supports INTEGER*1... skipped checking if Fortran 90 compiler supports INTEGER*2... skipped checking if Fortran 90 compiler supports INTEGER*4... skipped checking if Fortran 90 compiler supports INTEGER*8... skipped checking if Fortran 90 compiler supports INTEGER*16... skipped checking if Fortran 90 compiler supports REAL... skipped checking if Fortran 90 compiler supports REAL*2... skipped checking if Fortran 90 compiler supports REAL*4... skipped checking if Fortran 90 compiler supports REAL*8... skipped checking if Fortran 90 compiler supports REAL*16... skipped checking if Fortran 90 compiler supports DOUBLE PRECISION... skipped checking if Fortran 90 compiler supports COMPLEX... skipped checking if Fortran 90 compiler supports COMPLEX*8... skipped checking if Fortran 90 compiler supports COMPLEX*16... skipped checking if Fortran 90 compiler supports COMPLEX*32... skipped checking if Fortran 90 compiler supports DOUBLE COMPLEX... skipped ============================================================================ == Header file tests ============================================================================ checking alloca.h usability... no checking alloca.h presence... no checking for alloca.h... no checking aio.h usability... no checking aio.h presence... no checking for aio.h... no checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking execinfo.h usability... no checking execinfo.h presence... no checking for execinfo.h... no checking err.h usability... yes checking err.h presence... yes checking for err.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking for inttypes.h... (cached) yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking libutil.h usability... yes checking libutil.h presence... yes checking for libutil.h... yes checking for memory.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking pthread.h usability... no checking pthread.h presence... no checking for pthread.h... no checking pty.h usability... no checking pty.h presence... no checking for pty.h... no checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking stropts.h usability... no checking stropts.h presence... no checking for stropts.h... no checking sys/fcntl.h usability... yes checking sys/fcntl.h presence... yes checking for sys/fcntl.h... yes checking sys/ipc.h usability... yes checking sys/ipc.h presence... yes checking for sys/ipc.h... yes checking sys/shm.h usability... yes checking sys/shm.h presence... yes checking for sys/shm.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/queue.h usability... yes checking sys/queue.h presence... yes checking for sys/queue.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/stat.h... (cached) yes checking sys/statfs.h usability... yes checking sys/statfs.h presence... yes checking for sys/statfs.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/tree.h usability... yes checking sys/tree.h presence... yes checking for sys/tree.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking net/uio.h usability... no checking net/uio.h presence... no checking for net/uio.h... no checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking sys/vfs.h usability... no checking sys/vfs.h presence... no checking for sys/vfs.h... no checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking syslog.h usability... yes checking syslog.h presence... yes checking for syslog.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking termios.h usability... yes checking termios.h presence... yes checking for termios.h... yes checking ulimit.h usability... yes checking ulimit.h presence... yes checking for ulimit.h... yes checking for unistd.h... (cached) yes checking util.h usability... yes checking util.h presence... yes checking for util.h... yes checking utmp.h usability... yes checking utmp.h presence... yes checking for utmp.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking crt_externs.h usability... no checking crt_externs.h presence... no checking for crt_externs.h... no checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking ioLib.h usability... no checking ioLib.h presence... no checking for ioLib.h... no checking sockLib.h usability... no checking sockLib.h presence... no checking for sockLib.h... no checking hostLib.h usability... no checking hostLib.h presence... no checking for hostLib.h... no checking shlwapi.h usability... no checking shlwapi.h presence... no checking for shlwapi.h... no checking sys/synch.h usability... no checking sys/synch.h presence... no checking for sys/synch.h... no checking for sys/mount.h... yes checking for sys/sysctl.h... yes checking for net/if.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking if works... yes ============================================================================ == Type tests ============================================================================ checking size of pid_t... 4 checking for socklen_t... yes checking for struct sockaddr_in... yes checking for struct sockaddr_in6... yes checking for struct sockaddr_storage... yes checking whether AF_UNSPEC is declared... yes checking whether PF_UNSPEC is declared... yes checking whether AF_INET6 is declared... yes checking whether PF_INET6 is declared... yes checking if SA_RESTART defined in signal.h... yes checking for struct sockaddr.sa_len... no checking for struct dirent.d_type... no checking for siginfo_t.si_fd... yes checking for siginfo_t.si_band... yes ============================================================================ == Library and Function tests ============================================================================ checking if we need -lutil for openpty... yes checking for openpty... yes checking for gethostbyname in -lnsl... no checking for socket in -lsocket... no checking if we need -lrt for sched_yield... not found checking for sched_yield... no checking if we need -lgen for dirname... no checking for dirname... yes checking if we need -lm for ceil... yes checking for ceil... yes checking for asprintf... yes checking for snprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for openpty... (cached) yes checking for isatty... yes checking for getpwuid... yes checking for fork... yes checking for waitpid... yes checking for execve... yes checking for pipe... yes checking for ptsname... no checking for setsid... yes checking for mmap... no checking for tcgetpgrp... yes checking for posix_memalign... no checking for strsignal... yes checking for sysconf... yes checking for syslog... yes checking for regcmp... no checking for regexec... yes checking for regfree... yes checking for _NSGetEnviron... no checking for socketpair... yes checking for strncpy_s... no checking for _strdup... yes checking for usleep... yes checking for mkfifo... yes checking for htonl define... yes checking for htonl... yes checking whether va_copy is declared... yes checking whether __va_copy is declared... yes checking whether __func__ is declared... yes ============================================================================ == System-specific tests ============================================================================ checking checking for type of MPI_Offset... long long checking checking for an MPI datatype for MPI_Offset... MPI_LONG_LONG checking for _SC_NPROCESSORS_ONLN... no checking whether byte ordering is bigendian... no checking for broken qsort... no checking if word-sized integers must be word-size aligned... no checking if C compiler and POSIX threads work as is... no checking if C++ compiler and POSIX threads work as is... no checking if F77 compiler and POSIX threads work as is... no checking if C compiler and POSIX threads work with -Kthread... no checking if C compiler and POSIX threads work with -kthread... no checking if C compiler and POSIX threads work with -pthread... no checking if C compiler and POSIX threads work with -pthreads... no checking if C compiler and POSIX threads work with -mt... no checking if C compiler and POSIX threads work with -mthreads... no checking if C++ compiler and POSIX threads work with -Kthread... no checking if C++ compiler and POSIX threads work with -kthread... no checking if C++ compiler and POSIX threads work with -pthread... no checking if C++ compiler and POSIX threads work with -pthreads... no checking if C++ compiler and POSIX threads work with -mt... no checking if C++ compiler and POSIX threads work with -mthreads... no checking if F77 compiler and POSIX threads work with -Kthread... no checking if F77 compiler and POSIX threads work with -kthread... no checking if F77 compiler and POSIX threads work with -pthread... no checking if F77 compiler and POSIX threads work with -pthreads... no checking if F77 compiler and POSIX threads work with -mt... no checking if F77 compiler and POSIX threads work with -mthreads... no checking if C compiler and POSIX threads work with -lpthreads... no checking if C compiler and POSIX threads work with -llthread... no checking if C compiler and POSIX threads work with -lpthread... no checking if C++ compiler and POSIX threads work with -lpthreads... no checking if C++ compiler and POSIX threads work with -llthread... no checking if C++ compiler and POSIX threads work with -lpthread... no checking if F77 compiler and POSIX threads work with -lpthreads... no checking if F77 compiler and POSIX threads work with -llthread... no checking if F77 compiler and POSIX threads work with -lpthread... no checking for PTHREAD_MUTEX_ERRORCHECK_NP... no checking for PTHREAD_MUTEX_ERRORCHECK... no checking for working POSIX threads package... no checking if C compiler and Solaris threads work... no checking if C++ compiler and Solaris threads work... no checking if F77 compiler and Solaris threads work... no checking for working Solaris threads package... no checking for type of thread support... none found ************************************************************************ Open MPI was unable to find threading support on your system. The OMPI development team is considering requiring threading support for proper OMPI execution. This is in part because we are not aware of any OpenFabrics users that do not have thread support -- so we need you to e-mail the Open MPI Users mailing list to tell us if this is a problem for you. ************************************************************************ checking if want OPAL thread support... undef checking if want fault tolerance thread... Disabled (fault tolerance disabled --without-ft) checking if want MPI_THREAD_MULTIPLE support... Disabled checking whether ln -s works... yes checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking dependency style of gcc... (cached) gcc3 checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking for flavor of ps to use... unknown checking if build filesystem is case sensitive... yes checking if configuring for case sensitive filesystem... yes checking whether RLIMIT_NPROC is declared... no checking whether RLIMIT_MEMLOCK is declared... no ============================================================================ == Modular Component Architecture (MCA) setup ============================================================================ checking for subdir args... '--disable-mpi-f90' '--without-sge' '--without-slurm' '--enable-contrib-no-build=vt' '--with-libltdl=external' '--with-hwloc=/usr/pkg' '--with-wrapper-ldflags=-L/usr/pkg/lib -R/usr/pkg/lib' 'OPAL_HAVE_LTDL_ADVISE=0' '--prefix=/usr/pkg' '--build=i386-pc-minix' '--host=i386-pc-minix' '--mandir=/usr/pkg/man' 'build_alias=i386-pc-minix' 'host_alias=i386-pc-minix' 'CC=gcc' 'CFLAGS=-Wno-error -march=i586 -I/usr/pkg/include -I/usr/include' 'LDFLAGS=-L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib' 'LIBS=-lcompat_minix -lminlib' 'CPPFLAGS=-I/usr/pkg/include -I/usr/include' 'CXX=g++' 'CXXFLAGS=-Wno-error -march=i586 -I/usr/pkg/include -I/usr/include' 'F77=f77' 'FFLAGS=-O' 'FC=f77' 'PKG_CONFIG=' ==> Pre-emptively configuring the hwloc framework to satisfy dependencies. +++ Configuring MCA framework hwloc checking for no configure components in framework hwloc... checking for m4 configure components in framework hwloc... hwloc132, external --- MCA component hwloc:hwloc132 (m4 configuration macro) checking for MCA component hwloc:hwloc132 compile mode... static expr: syntax error checking if MCA component hwloc:hwloc132 can compile... no --- MCA component hwloc:external (m4 configuration macro) checking for MCA component hwloc:external compile mode... static checking --with-hwloc-libdir value... simple ok (unspecified) checking looking for external hwloc in... (/usr/pkg) checking hwloc.h usability... no checking hwloc.h presence... no checking for hwloc.h... no expr: syntax error checking if MCA component hwloc:external can compile... no configure: WARNING: Did not find a suitable static opal hwloc component configure: error: Cannot continue *** Error code 1 Stop. bmake: stopped in /usr/pkgsrc/parallel/openmpi *** Error code 1 Stop. bmake: stopped in /usr/pkgsrc/parallel/openmpi