=> Bootstrap dependency digest>=20010302: found digest-20121220
===> Building for plink-1.07
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c plink.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c options.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c input.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c binput.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c tinput.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genome.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c helper.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c stats.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c filters.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c locus.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c multi.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c crandom.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c cluster.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c mds.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c output.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c informative.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c assoc.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c epi.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c prephap.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c phase.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c trio.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c tdt.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c sharing.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genepi.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c sets.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c perm.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c mh.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genedrop.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c gxe.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c merge.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c hotel.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c multiple.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c haploCC.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c haploTDT.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c poo.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c webcheck.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c qfam.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c linear.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c bmerge.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c parse.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c mishap.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c legacy.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c homozyg.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c segment.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c model.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c logistic.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c glm.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c dcdflib.cpp
dcdflib.cpp: In function 'void E0000(int, int*, double*, double*, long unsigned int*, long unsigned int*, double*, double*, double*, double*, double*, double*, double*)':
dcdflib.cpp:6025: warning: deprecated conversion from string constant to 'char*'
dcdflib.cpp: In function 'double dlanor(double*)':
dcdflib.cpp:6401: warning: deprecated conversion from string constant to 'char*'
dcdflib.cpp: In function 'double dstrem(double*)':
dcdflib.cpp:6782: warning: deprecated conversion from string constant to 'char*'
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c elf.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c dfam.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c fisher.cpp
fisher.cpp: In function 'void fexact(int*, int*, double*, int*, double*, double*, double*, double*, double*, int*)':
fisher.cpp:261: warning: deprecated conversion from string constant to 'char*'
fisher.cpp:267: warning: deprecated conversion from string constant to 'char*'
fisher.cpp:273: warning: deprecated conversion from string constant to 'char*'
fisher.cpp: In function 'void f2xact(int*, int*, double*, int*, double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, int*, int*, double*)':
fisher.cpp:448: warning: deprecated conversion from string constant to 'char*'
fisher.cpp:450: warning: deprecated conversion from string constant to 'char*'
fisher.cpp:501: warning: deprecated conversion from string constant to 'char*'
fisher.cpp:509: warning: deprecated conversion from string constant to 'char*'
fisher.cpp:563: warning: deprecated conversion from string constant to 'char*'
fisher.cpp:751: warning: deprecated conversion from string constant to 'char*'
fisher.cpp: In function 'void f5xact(double*, const double*, int*, int*, int*, int*, double*, int*, int*, int*, int*, int*, int*, int*, int*)':
fisher.cpp:1539: warning: deprecated conversion from string constant to 'char*'
fisher.cpp:1555: warning: deprecated conversion from string constant to 'char*'
fisher.cpp:1597: warning: deprecated conversion from string constant to 'char*'
fisher.cpp: In function 'int iwork(int, int*, int, int)':
fisher.cpp:2001: warning: deprecated conversion from string constant to 'char*'
fisher.cpp: In function 'void isort(int*, int*)':
fisher.cpp:2078: warning: deprecated conversion from string constant to 'char*'
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c linput.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c sockets.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c lookup.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c proxy.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c pdriver.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c haploQTL.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c haplohelper.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c haplowindow.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genogroup.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c nonfounderphasing.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c clumpld.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c genoerr.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c em.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c impute.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c metaem.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c profile.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c nlist.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c whap.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c simul.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c gvar.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c cnv.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c step.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c greport.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c flip.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c qualscores.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c cnvqt.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c cfamily.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c setscreen.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c idhelp.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c tag.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c hapglm.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c lookup2.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c blox.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c zed.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c dosage.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c annot.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c metaanal.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c r.cpp
In file included from r.cpp:29:
Rconnection.h: In constructor 'Rsymbol::Rsymbol(Rmessage*)':
Rconnection.h:203: warning: deprecated conversion from string constant to 'char*'
Rconnection.h: In constructor 'Rsymbol::Rsymbol(unsigned int*, Rmessage*)':
Rconnection.h:206: warning: deprecated conversion from string constant to 'char*'
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c Rconnection.cpp
In file included from Rconnection.cpp:30:
Rconnection.h: In constructor 'Rsymbol::Rsymbol(Rmessage*)':
Rconnection.h:203: warning: deprecated conversion from string constant to 'char*'
Rconnection.h: In constructor 'Rsymbol::Rsymbol(unsigned int*, Rmessage*)':
Rconnection.h:206: warning: deprecated conversion from string constant to 'char*'
Rconnection.cpp: At global scope:
Rconnection.cpp:56: warning: deprecated conversion from string constant to 'char*'
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c zfstream.cpp
g++ -Wno-error -march=i586 -I/usr/pkg/include -I/usr/include -Dfopen64=fopen -I. -DUNIX -static -DWITH_R_PLUGINS -DWITH_ZLIB -DWITH_LAPACK -c lapackf.cpp
lapackf.cpp: In function 'bool svd_lapack(int, vector_t&, vector_t&, matrix_t&)':
lapackf.cpp:58: warning: deprecated conversion from string constant to 'char*'
lapackf.cpp:63: warning: deprecated conversion from string constant to 'char*'
lapackf.cpp: In function 'bool eigen_lapack(int, vector_t&, vector_t&, matrix_t&)':
lapackf.cpp:132: warning: deprecated conversion from string constant to 'char*'
lapackf.cpp:132: warning: deprecated conversion from string constant to 'char*'
lapackf.cpp:132: warning: deprecated conversion from string constant to 'char*'
lapackf.cpp:158: warning: deprecated conversion from string constant to 'char*'
lapackf.cpp:158: warning: deprecated conversion from string constant to 'char*'
lapackf.cpp:158: warning: deprecated conversion from string constant to 'char*'
g++ -o plink plink.o options.o input.o binput.o tinput.o genome.o helper.o stats.o filters.o locus.o multi.o crandom.o cluster.o mds.o output.o informative.o assoc.o epi.o prephap.o phase.o trio.o tdt.o sharing.o genepi.o sets.o perm.o mh.o genedrop.o gxe.o merge.o hotel.o multiple.o haploCC.o haploTDT.o poo.o webcheck.o qfam.o linear.o bmerge.o parse.o mishap.o legacy.o homozyg.o segment.o model.o logistic.o glm.o dcdflib.o elf.o dfam.o fisher.o linput.o sockets.o lookup.o proxy.o pdriver.o haploQTL.o haplohelper.o haplowindow.o genogroup.o nonfounderphasing.o clumpld.o genoerr.o em.o impute.o metaem.o profile.o nlist.o whap.o simul.o gvar.o cnv.o step.o greport.o flip.o qualscores.o cnvqt.o cfamily.o setscreen.o idhelp.o tag.o hapglm.o lookup2.o blox.o zed.o dosage.o annot.o metaanal.o r.o Rconnection.o zfstream.o lapackf.o  -lcrypt -lz -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -llapack -lblas -lf2c  
/usr/pkgsrc/work/biology/plink/work/.buildlink/lib/liblapack.a(dormbr.o): In function `dormbr_':
dormbr.f:(.text+0x238): undefined reference to `_gfortran_concat_string'
dormbr.f:(.text+0x28b): undefined reference to `_gfortran_concat_string'
dormbr.f:(.text+0x2e3): undefined reference to `_gfortran_concat_string'
dormbr.f:(.text+0x333): undefined reference to `_gfortran_concat_string'
/usr/pkgsrc/work/biology/plink/work/.buildlink/lib/liblapack.a(dormlq.o): In function `dormlq_':
dormlq.f:(.text+0x1ba): undefined reference to `_gfortran_concat_string'
/usr/pkgsrc/work/biology/plink/work/.buildlink/lib/liblapack.a(dormlq.o):dormlq.f:(.text+0x2a7): more undefined references to `_gfortran_concat_string' follow
/usr/pkgsrc/work/biology/plink/work/.buildlink/lib/liblapack.a(dlasd0.o): In function `dlasd0_':
dlasd0.f:(.text+0x3fc): undefined reference to `_gfortran_pow_i4_i4'
/usr/pkgsrc/work/biology/plink/work/.buildlink/lib/liblapack.a(dlasda.o): In function `dlasda_':
dlasda.f:(.text+0x7f0): undefined reference to `_gfortran_pow_i4_i4'
dlasda.f:(.text+0x924): undefined reference to `_gfortran_pow_i4_i4'
/usr/pkgsrc/work/biology/plink/work/.buildlink/lib/liblapack.a(dlamch.o): In function `dlamc2_':
dlamch.f:(.text+0xd06): undefined reference to `_gfortran_st_write'
dlamch.f:(.text+0xd1f): undefined reference to `_gfortran_transfer_integer'
dlamch.f:(.text+0xd31): undefined reference to `_gfortran_st_write_done'
/usr/pkgsrc/work/biology/plink/work/.buildlink/lib/liblapack.a(ilaenv.o): In function `ilaenv_':
ilaenv.f:(.text+0x133): undefined reference to `_gfortran_compare_string'
ilaenv.f:(.text+0x150): undefined reference to `_gfortran_compare_string'
ilaenv.f:(.text+0x16d): undefined reference to `_gfortran_compare_string'
ilaenv.f:(.text+0x18a): undefined reference to `_gfortran_compare_string'
ilaenv.f:(.text+0x1a7): undefined reference to `_gfortran_compare_string'
/usr/pkgsrc/work/biology/plink/work/.buildlink/lib/liblapack.a(ilaenv.o):ilaenv.f:(.text+0x1c4): more undefined references to `_gfortran_compare_string' follow
/usr/pkgsrc/work/biology/plink/work/.buildlink/lib/liblapack.a(xerbla.o): In function `xerbla_':
xerbla.f:(.text+0x4e): undefined reference to `_gfortran_st_write'
xerbla.f:(.text+0x5c): undefined reference to `_gfortran_transfer_character'
xerbla.f:(.text+0x6a): undefined reference to `_gfortran_transfer_integer'
xerbla.f:(.text+0x72): undefined reference to `_gfortran_st_write_done'
xerbla.f:(.text+0x7e): undefined reference to `_gfortran_stop_numeric'
/usr/pkgsrc/work/biology/plink/work/.buildlink/lib/liblapack.a(dormtr.o): In function `dormtr_':
dormtr.f:(.text+0x1f2): undefined reference to `_gfortran_concat_string'
dormtr.f:(.text+0x245): undefined reference to `_gfortran_concat_string'
dormtr.f:(.text+0x29d): undefined reference to `_gfortran_concat_string'
dormtr.f:(.text+0x2ed): undefined reference to `_gfortran_concat_string'
/usr/pkgsrc/work/biology/plink/work/.buildlink/lib/liblapack.a(dormql.o): In function `dormql_':
dormql.f:(.text+0x182): undefined reference to `_gfortran_concat_string'
/usr/pkgsrc/work/biology/plink/work/.buildlink/lib/liblapack.a(dormql.o):dormql.f:(.text+0x285): more undefined references to `_gfortran_concat_string' follow
collect2: ld returned 1 exit status
gmake: *** [plink] Error 1
*** Error code 2

Stop.
bmake: stopped in /usr/pkgsrc/biology/plink
*** Error code 1

Stop.
bmake: stopped in /usr/pkgsrc/biology/plink